Acharya maintained the card of three-under 69 in the third round for a total of five-under 211.
Pokhareli pro golfer Deepak Neupane, who also carded three-under 69, held the second position with a total of even-par 216. Two strokes adrift was RNGC pro Rabi Khadka at 218 after the third round score of one-under 71.
Both Neupane and Khadka were jointly in the second position after the second round.
Sumandra Giri continued his dream run as the Gokarna amateur carded two-over 74 to hold the fourth position at six-over 222.
Nepal Professional Golfers Association has organized the event -- sixth under the Surya Nepal Golf Tour 2009-10 -- under the sponsorship of Surya Nepal Pvt Ltd. Out of the total cash prize of Rs 350,000, the winner of the main tournament will receive Rs 72,000.
Acharya continues to lead vote count in Pokhara